PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 25673
Common NameSELMODRAFT_15487, SELMODRAFT_25673
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NAC
Protein Properties Length: 161aa    MW: 18820.8 Da    PI: 10.3322
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
25673genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.2e-5331292128
    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104
             pGfrFhPtdeelv +yL++kv++k+l++ evi+++diyk++PwdLp+++ ++e+ wyfF+ rd+ky++++r+nr+tk g+Wkatg d++++++ +++ +glkk
  25673   3 LPGFRFHPTDEELVGFYLHRKVQHKTLPF-EVITQLDIYKYDPWDLPHMAVSGENVWYFFCLRDQKYRNSTRPNRVTKGGFWKATGPDRAIYTSdGSKCIGLKK 105
            69***************************.99***************77778899*************************************9966677***** PP

    NAM 105 tLvfykgrapkgektdWvmheyrl 128
            +Lvfykg+a kg+ktdWvmhe+rl
  25673 106 SLVFYKGKAAKGTKTDWVMHEFRL 129
            **********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.8672158IPR003441NAC domain
SuperFamilySSF1019414.45E-583158IPR003441NAC domain
PfamPF023655.5E-274129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
VILPGFRFHP TDEELVGFYL HRKVQHKTLP FEVITQLDIY KYDPWDLPHM AVSGENVWYF  60
FCLRDQKYRN STRPNRVTKG GFWKATGPDR AIYTSDGSKC IGLKKSLVFY KGKAAKGTKT  120
DWVMHEFRLP VLGSTKDPSK KRPPVFEESW AVCRIFKKRS M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B7e-52416019167NAC domain-containing protein 19
4dul_A7e-52416019167NAC domain-containing protein 19
1ut7_B7e-52416019167NO APICAL MERISTEM PROTEIN
1ut7_A7e-52416019167NO APICAL MERISTEM PROTEIN
1ut4_B7e-52416019167NO APICAL MERISTEM PROTEIN
1ut4_A7e-52416019167NO APICAL MERISTEM PROTEIN
3swp_D7e-52416022170NAC domain-containing protein 19
3swp_C7e-52416022170NAC domain-containing protein 19
3swp_B7e-52416022170NAC domain-containing protein 19
3swp_A7e-52416022170NAC domain-containing protein 19
3swm_D7e-52416022170NAC domain-containing protein 19
3swm_C7e-52416022170NAC domain-containing protein 19
3swm_B7e-52416022170NAC domain-containing protein 19
3swm_A7e-52416022170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002961347.11e-118hypothetical protein SELMODRAFT_25673, partial
RefseqXP_002983216.11e-118hypothetical protein SELMODRAFT_15487, partial
SwissprotQ9FIW53e-79NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLD8QP821e-118D8QP82_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ155581e-118(Selaginella moellendorffii)
STRINGEFJ388861e-118(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-80NAC domain containing protein 94
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]